- 1、本文档共60页,可阅读全部内容。
- 2、原创力文档(book118)网站文档一经付费(服务费),不意味着购买了该文档的版权,仅供个人/单位学习、研究之用,不得用于商业用途,未经授权,严禁复制、发行、汇编、翻译或者网络传播等,侵权必究。
- 3、本站所有内容均由合作方或网友上传,本站不对文档的完整性、权威性及其观点立场正确性做任何保证或承诺!文档内容仅供研究参考,付费前请自行鉴别。如您付费,意味着您自己接受本站规则且自行承担风险,本站不退款、不进行额外附加服务;查看《如何避免下载的几个坑》。如果您已付费下载过本站文档,您可以点击 这里二次下载。
- 4、如文档侵犯商业秘密、侵犯著作权、侵犯人身权等,请点击“版权申诉”(推荐),也可以打举报电话:400-050-0827(电话支持时间:9:00-18:30)。
查看更多
Pathway and Gene Set Analysis of Microarray Data(通路和基因微阵列数据的分析)
26/11/2009 Bioinformatics Workshop, Brno Pathway and Gene Set Analysis of Microarray Data Claus-D. Mayer Biomathematics Statistics Scotland (BioSS) My background Biomathematics and Statististics Scotland (BioSS): An academic research group Funded by the Scottish Government Staff distributed across different biological research institutes in Scotland BioSS employs: Statisticians, Bioinformaticians, Mathematical Modellers,… I am based at (but not employed by) the Rowett Institute (Aberdeen): Research in nutrition and health Joint Aberdeen University in 2008 The early steps of a microarray study Scientific Question (biological) Study design (biological/statistical) Conducting Experiment (biological) Preprocessing/Normalising Data (statistical) Finding differentially expressed genes (statistical) A data example Lee et al (2005) compared adipose tissue (abdominal subcutaenous adipocytes) between obese and lean Pima Indians Samples were hybridised on HGu95e-Affymetrix arrays (12639 genes/probe sets) Available as GDS1498 on the GEO database We selected the male samples only 10 obese vs 9 lean The “Result” Slightly more informative results This talk will discuss some methods of how to incorporate biological knowledge into microarray analysis The type of knowledge we deal with is rather simple: We know groups/sets of genes that for example Belong to the same pathway Have a similar function Are located on the same chromosome, etc… We will assume these groupings to be given, i.e we will not discuss methods how to detect pathways, networks, gene clusters What is a pathway? No clear definition Wikipedia: “In biochemistry, metabolic pathways are series of chemical reactions occurring within a cell. In each pathway, a principal chemical is modified by chemical reactions.” These pathways describe enzymes and metabolites But often the word “pathway” is also used to describe gene regulatory networks or protein interaction networks In all cases a pathway describes a biological f
您可能关注的文档
- Overview of Importance of Materials in Space (材料在空间的重要性的概述).pdf
- Overview of Systems Thinking(系统思维的概述).pdf
- Overview of Methods of Analysis of Beams on (梁的分析方法的概述).pdf
- Overview of the Effect of Post Welded Heat (概述焊接后热的影响).pdf
- Overview of Mitsubishi Services(三菱服务概述).pdf
- Overview of the Zenotec materials Wieland (Zenotec材料维兰德的概述).pdf
- Overvoltage protection study on Vacuum (过电压保护装置研究真空).pdf
- Overview of Standard Activities for Display (显示的标准活动的概述).pdf
- OWNER’S MANUAL American Honda Motor (用户手册美国本田汽车).pdf
- OWNER’S MANUAL SUPPLEMENT INDY 500, 500 (用户手册补充印第安纳·琼斯500年,500年).pdf
- 10《那一年,面包飘香》教案.docx
- 13 花钟 教学设计-2023-2024学年三年级下册语文统编版.docx
- 2024-2025学年中职学校心理健康教育与霸凌预防的设计.docx
- 2024-2025学年中职生反思与行动的反霸凌教学设计.docx
- 2023-2024学年人教版小学数学一年级上册5.docx
- 4.1.1 线段、射线、直线 教学设计 2024-2025学年北师大版七年级数学上册.docx
- 川教版(2024)三年级上册 2.2在线导航选路线 教案.docx
- Unit 8 Dolls (教学设计)-2024-2025学年译林版(三起)英语四年级上册.docx
- 高一上学期体育与健康人教版 “贪吃蛇”耐久跑 教案.docx
- 第1课时 亿以内数的认识(教学设计)-2024-2025学年四年级上册数学人教版.docx
文档评论(0)